MHC -Ⅰ模型下载

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MHC -Ⅰ模型下载

序列下载

http://pfam.xfam.org/family/PF00129#tabview=tab3

运行结果

模型下载失败

下载目录

C:\\Users\\X1A5E~1.JIA\\AppData\\Local\\Temp\'

操作

#python
from Bio import SeqIO
for sequence in SeqIO.parse('e://mhcflurry/down/PF00129_seed_fasta.txt', "fasta"): 
    print(sequence.id)
    print(sequence.seq)
    print(len(sequence))

from Bio import SeqIO
for sequence in SeqIO.parse('e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta.txt', "fasta"): 
    print('>'+sequence.id)
    print(sequence.seq)
    print(len(sequence))

#可视化操作
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta_result.fasta --method=gates
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta.txt --method=gates
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta.txt --method=squiggle
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta_result.fasta --method=squiggle
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta_result.fasta --method=gates