MHC -Ⅰ模型下载

欢迎关注我的微信公众号【万能的小江江】

MHC -Ⅰ模型下载

序列下载

http://pfam.xfam.org/family/PF00129#tabview=tab3

运行结果

模型下载失败

下载目录

1

C:\\Users\\X1A5E~1.JIA\\AppData\\Local\\Temp\'

操作

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12


#python
from Bio import SeqIO
for sequence in SeqIO.parse('e://mhcflurry/down/PF00129_seed_fasta.txt', "fasta"): 
    print(sequence.id)
    print(sequence.seq)
    print(len(sequence))
    
from Bio import SeqIO
for sequence in SeqIO.parse('e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta.txt', "fasta"): 
    print('>'+sequence.id)
    print(sequence.seq)
    print(len(sequence))

1
2
3
4
5
6


#可视化操作
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta_result.fasta --method=gates
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta.txt --method=gates
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta.txt --method=squiggle
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta_result.fasta --method=squiggle
Squiggle e://mhcflurry/down/PF00129_seed_fasta/PF00129_seed_fasta_result.fasta --method=gates